Science

Golden Ratio's Grace

 

Where Pythagoras meets divine design,

Three points unite, a triangle unfolds;

Ancient wisdom intertwined with lines,

Beauty born of numbers, a story untold.

 

 

Three points unite, a triangle unfolds;

Kepler's vision, a cosmic embrace;

Beauty born of numbers, a story untold,

In the spiral's dance, a human face.

 

 

Kepler's vision, a cosmic embrace;

Imperfect symmetry, perfectly true;

In the spiral's dance, a human face,

Flawed and faceted, yet shining through.

 

 

Imperfect symmetry, perfectly true;

Where Pythagoras meets divine design;

Flawed and faceted, yet shining through;

Ancient wisdom intertwined with lines.

Author's Notes/Comments: 

"Golden Ratio's Grace" - A 16-line pantoum celebrating the mathematical concept of the golden ratio and its relationship to triangles. The poem uses repeating lines in a traditional pantoum pattern to explore the themes of divine design, beauty, and cosmic harmony.

The Geometer's Gambit

 

In realms where reason's light grows dim,

A mad seer sought to unlock the divine;

With compass, straight-edge and a zealot's whim,

He etched a triangle, a secret sign.

 

A mad seer sought to unlock the divine,

In golden ratios, irrational and pure;

He etched a triangle, a secret sign

Of truths that lesser minds could not endure.

 

In golden ratios, irrational and pure,

One to root phi to phi, a cosmic key

Of truths that lesser minds could not endure—

A sequence forged in sacred geometry.

 

One to root phi to phi, a cosmic key,

With Pythagoras' wisdom intertwined;

A sequence forged in sacred geometry,

In this symbol, the Sublime enshrined.

 

 

With Pythagoras' wisdom intertwined—

Behold! The Kepler Triangle manifest!

In this symbol, the Sublime enshrined:

Beauty's madness and Nature's behest.

 

 

Behold! The Kepler Triangle manifest!

Reveal to mortal eyes your strange design;

Beauty's madness and Nature's behest—

A mad seer sought to unlock the divine.

 

 

Reveal to mortal eyes your strange design,

With compass, straight-edge and a zealot's whim;

In realms where reason's light grows dim,

A geometer's gambit—risk soul and limb.

Author's Notes/Comments: 

"The Geometer's Gambit" - A 20-line extended pantoum about a seeker using geometric tools (compass and straightedge) to delve into divine mathematical truths through the Kepler Triangle. The poem adheres to the pantoum's repeating line structure to convey a narrative of mystical mathematical exploration.

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Echoes of Deception, Threads of Hope

Folder: 
Poems

 Echoes of Deception, Threads of Hope

 

 

In shadows of fear, a whisper takes hold,

A sinister seed, a conspiracy untold.

Whispers of a virus, man-made and vile,

Profit the motive, trust exiled.

 

 

Amidst echoes of doubt and deceit's dark dance,

A personal battle, a silent stance.

Isolation's sting, stigma's crushing weight,

The heaviness of uncertainty's relentless gait.

 

 

Michel Simonin's struggle, a fight to be heard,

Against AIDS' cruel stigma, his voice undeterred.

In letters and television, his story unfurled,

Defying the silence, refusing to be deterred.

 

 

Through tears of resilience, a choice bravely made,

To shatter the silence, to not be swayed.

Unveiling the humanity behind the disease,

Reclaiming identity, refusing to appease.

 

 

Yet in depths of sorrow's unending night,

Science illuminates, a beacon of light.

WGS and NGS unravel the viral code,

Evolution's truth, HIV's primal abode.

 

 

In sequencing's intricate art, a tale unfolds,

Of chimpanzee origins, zoonotic thresholds. Palindromes dance in the RNA's sway,

Nature's complex beauty, now on display.

 

 

Yet echoes of deception still linger and spread,

Shattering lives, filling hearts with dread.

The vulnerable bear the heaviest toll,

In fabrication's web, their innocence stole.

 

 

In this intimate war, we must take a stand,

Embracing our scars, extending a hand.

Empathy our salve, compassion our guide,

In unity and truth, our spirits reside.

 

 

From pain's crucible, we'll rise transformed,

Scars into strength, wisdom reborn.

In the symphony of survival, harmony will reign,

As we honour the journey, through sun and rain.

 

 

With science as our compass, truth as our light,

We'll navigate the landscapes of the heart's might.

Reclaiming our stories, our voices bold,

In courage and resilience, our lives we'll mould.

 

 

In the tapestry of existence, we'll find our place,

Stitching together healing, with tender grace.

Each breath a rebellion, each moment a choice,

To survive and thrive, with authentic voice.

 

 

In the echoes of resilience, hope whispers anew,

Threads of connection, strength to see us through. 

Through shadows and light, we'll weave our way,

Embracing our truth, come what may.

 

 

In the alchemy of survival, transformation blooms, 

Vulnerability becomes armour, silence finds its tune.

From shattered fragments, a mosaic we'll raise,

A testament to the unbreakable human spirit's blaze.

Author's Notes/Comments: 

 Although already mentioned in bio, I am a scientist, a microbiologist (traditional and current bioinformatics whole genome sequencing variety). I also admit I received payment from Zoetis, a pharmacy company, which equated to AUS 30c/hour. 

 

World AIDS Day on December 1st is a time for reflection, remembrance, and raising awareness about the ongoing fight against HIV/AIDS. I had hoped to share this poem in time for the occasion, but the weight of the topic and the desire to do it justice meant I simply ran out of time, spoons, and headspace to complete it. I had resigned myself to waiting until next year to perfect the piece.

 

 

However, a recent comment I encountered gave me pause. It related to the pernicious conspiracy theory that HIV is a man-made virus, a falsehood popularised by "cultropreneurials" and denialists whose views are often rooted in classism, racism, sexism, homophobia, and other forms of prejudice. 

 

This dangerous misinformation continues to spread, causing actual harm to individuals and communities affected by HIV/AIDS.

 

 

In light of this, I felt compelled to share the poem now, even in its imperfect state, as a small act of resistance against the echoes of deception that still reverberate. 

 

 

The poem "Echoes of Deception, Threads of Hope" attempts to grapple with the complex history and ongoing reality of the HIV/AIDS epidemic.

 

It begins by acknowledging the whispers of conspiracy, the sinister seeds of doubt sown by those profiting from fear and mistrust. 

 

The poem then delves into the personal battles fought by those living with HIV/AIDS and the crushing weight of stigma, isolation, and uncertainty they face.

 

 

The story of Michel Simonin, a French activist who fought tirelessly to break the silence around AIDS in the 1980s, is a thread of resilience woven throughout the poem. His courage in the face of cruel stigma and his refusal to be silenced are a testament to the unbreakable human spirit.

 

 

As the poem unfolds, it turns to the illuminating power of science, unravelling the viral code through advanced sequencing techniques like WGS and NGS. The beauty and complexity of evolution are juxtaposed against the echoes of deception that continue to shatter lives.

 

 

The poem is a call to action, an invitation to stand together in this intimate war, armed with empathy, compassion, and truth. It speaks to the transformative power of resilience, the alchemy of turning scars into strength, pain into wisdom.

 

 

Ultimately, "Echoes of Deception, Threads of Hope" is a tribute to the tapestry of human existence, the threads of connection that bind us together in the face of unimaginable challenges. It is a reminder that each breath, each moment, is a choice - to survive, to thrive, to raise our voices in an authentic chorus of hope.

 

 

As we navigate the complex landscape of the HIV/AIDS epidemic, may we hold fast to the compass of science, the light of truth, and the power of our shared humanity. Let this poem be a small thread in the larger tapestry of our ongoing struggle, a testament to the unbreakable spirit that resides within us all.

Echoes of Deception, Threads of Hope

Folder: 
Poems

 Echoes of Deception, Threads of Hope

 

 

In shadows of fear, a whisper takes hold,

A sinister seed, a conspiracy untold.

Whispers of a virus, man-made and vile,

Profit the motive, trust exiled.

 

 

Amidst echoes of doubt and deceit's dark dance,

A personal battle, a silent stance.

Isolation's sting, stigma's crushing weight,

The heaviness of uncertainty's relentless gait.

 

 

Michel Simonin's struggle, a fight to be heard,

Against AIDS' cruel stigma, his voice undeterred.

In letters and television, his story unfurled,

Defying the silence, refusing to be deterred.

 

 

Through tears of resilience, a choice bravely made,

To shatter the silence, to not be swayed.

Unveiling the humanity behind the disease,

Reclaiming identity, refusing to appease.

 

 

Yet in depths of sorrow's unending night,

Science illuminates, a beacon of light.

WGS and NGS unravel the viral code,

Evolution's truth, HIV's primal abode.

 

 

In sequencing's intricate art, a tale unfolds,

Of chimpanzee origins, zoonotic thresholds.
Palindromes dance in the RNA's sway,

Nature's complex beauty, now on display.

 

 

Yet echoes of deception still linger and spread,

Shattering lives, filling hearts with dread.

The vulnerable bear the heaviest toll,

In fabrication's web, their innocence stole.

 

 

In this intimate war, we must take a stand,

Embracing our scars, extending a hand.

Empathy our salve, compassion our guide,

In unity and truth, our spirits reside.

 

 

From pain's crucible, we'll rise transformed,

Scars into strength, wisdom reborn.

In the symphony of survival, harmony will reign,

As we honour the journey, through sun and rain.

 

 

With science as our compass, truth as our light,

We'll navigate the landscapes of the heart's might.

Reclaiming our stories, our voices bold,

In courage and resilience, our lives we'll mould.

 

 

In the tapestry of existence, we'll find our place,

Stitching together healing, with tender grace.

Each breath a rebellion, each moment a choice,

To survive and thrive, with authentic voice.

 

 

In the echoes of resilience, hope whispers anew,

Threads of connection, strength to see us through. 

Through shadows and light, we'll weave our way,

Embracing our truth, come what may.

 

 

In the alchemy of survival, transformation blooms, 

Vulnerability becomes armour, silence finds its tune.

From shattered fragments, a mosaic we'll raise,

A testament to the unbreakable human spirit's blaze.

Author's Notes/Comments: 

 Although my bio mentions that I am a scientist and a microbiologist (of the traditional and current bioinformatics whole genome sequencing variety), I also admit I received payment from Zoetis, a pharmacy company, for AUS 30c/hour. 

 

World AIDS  Day on December 1st is a time for reflection, remembrance, and awareness raising about the ongoing fight against HIV/AIDS. I had hoped to share this poem in time for the occasion, but the weight of the topic and the desire to do it justice meant I ran out of time, spoons, and headspace to complete it. I had resigned myself to waiting until next year to perfect the piece.

 

 

However, a recent comment I encountered gave me pause. It related to the pernicious conspiracy theory that HIV is a man-made virus, a falsehood popularised by "cultropreneurials" and denialists whose views are often rooted in classism, racism, sexism, homophobia, and other forms of prejudice. 

 

This dangerous misinformation continues to spread, causing actual harm to individuals and communities affected by HIV/AIDS.

 

 

In light of this, I felt compelled to share the poem now, even in its imperfect state, as a small act of resistance against the echoes of deception that still reverberate. 

 

 

The poem "Echoes of Deception, Threads of Hope" attempts to grapple with the complex history and ongoing reality of the HIV/AIDS epidemic.

 

It begins by acknowledging the whispers of conspiracy, the sinister seeds of doubt sown by those profiting from fear and mistrust. 

 

The poem then delves into the personal battles fought by those living with HIV/AIDS and the crushing weight of stigma, isolation, and uncertainty they face.

 

 

The story of Michel Simonin, a French activist who tirelessly fought to break the silence around AIDS in the 1980s, is a thread of resilience woven throughout the poem. His courage in the face of cruel stigma and his refusal to be silenced are testaments to the unbreakable human spirit.

 

 

As the poem unfolds, it turns to the illuminating power of science, unravelling the viral code through advanced sequencing techniques like WGS and NGS. The beauty and complexity of evolution are juxtaposed against the echoes of deception that continue to shatter lives.

 

 

The poem is a call to action, an invitation to stand together in this intimate war, armed with empathy, compassion, and truth. It speaks to the transformative power of resilience, the alchemy of turning scars into strength, pain into wisdom.

 

 

Ultimately, "Echoes of Deception, Threads of Hope" is a tribute to the tapestry of human existence, the threads of connection that bind us together in the face of unimaginable challenges. It reminds us that each breath, each moment, is a choice—to survive, to thrive, to raise our voices in an authentic chorus of hope.

 

 

As we navigate the complex landscape of the HIV/AIDS epidemic, may we hold fast to the compass of science, the light of truth, and the power of our shared humanity. Let this poem be a small thread in the larger tapestry of our ongoing struggle, a testament to the unbreakable spirit that resides within us all.

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The Caduceus and the Creed: A Medical Misconception

 

         "Primum non nocere," oft misapplied,

 

Not absolute, but a principle to guide.

 

In Hippocrates' time and modern day,

 

It's context and intent that hold sway.

 

 

 

The Greek, "ὀφελέειν ἢ μὴ βλάπτειν," rings true,

 

"To benefit, or at least do no harm," anew.

 

A nuanced approach, not black and white,

 

Balancing risks in healing's light.

 

 

 

The caduceus twined, with wings so bright,

 

A symbol of commerce, not healing's might.

 

Asclepius' staff, with serpent alone,

 

The true emblem of medicine, long known.

 

 

 

In modern clinics, where science reigns,

 

Ethical practice carefully maintains

 

A balance 'twixt benefit and potential harm,

 

With patient's values central to this charm.

 

 

 

Open communication, a cornerstone strong,

 

Where patient and doctor, together belong.

 

In shared decisions, they navigate

 

The complex paths that health dictate.

 

 

 

Some may twist ethics for selfish gain,

 

But true healers strive to ease pain.

 

With evidence-based practice as their guide,

 

They stand against misinformation's tide.

 

 

 

"To benefit, or at least do no harm," evolves still,

 

Not perfection, but good faith's will.

 

From rigorous study, and trials so keen,

 

True healing emerges, complex yet clean.

 

 

 

In healing's art, there's no guarantee,

 

But ethical practice sets conscience free.

 

With care and skill, and wisdom's light,

 

We navigate health's day and night.

 

Intelligence Vs Wisdom: Or why can’t we have both?

Intelligence Vs Wisdom: Or why can’t we have both?

Author's Notes/Comments: 

This heartfelt post is a journey of love, loss, and healing as I, a devoted pet owner, cope with grief while caring for my remaining pets. This hopefully poignant blog attempts to blend science and memory, and should resonate with anyone who's felt the sorrow of a heartbreaking goodbye and cherishes lasting connections with our animal companions. 

Think Viral, Not Antimicrobial

Folder: 
Poems

Their noses are red


And their throats hurt too


90% of all colds are viral


Don’t prescribe antimicrobials boo!

Author's Notes/Comments: 

Please don't take antibiotics/antimicrobials if you have a viral infection. They will not ease your symptoms, kill beneficial bacteria, and increase the chance of antimicrobial resistance, which is now directly and indirectly responsible for killing more people per year than cancers! 

Science Experiment (2024 challenge day 6)

Folder: 
2024
Author's Notes/Comments: 

Written 3/19/24

Science

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DNA

Folder: 
2020
Author's Notes/Comments: 

Written 6/5/2020